Black Bean Butternut Squash

Close-up of Black Bean and Butternut Squash Enchilada Boats on a rustic plate, showing melted cheese and fresh cilantro garnish. Pin it
Close-up of Black Bean and Butternut Squash Enchilada Boats on a rustic plate, showing melted cheese and fresh cilantro garnish. | cookedandcozy.com

This dish features tender zucchini boats filled with a flavorful blend of roasted butternut squash, black beans, and sautéed onions. Enhanced with chili powder, cumin, and smoked paprika, the mixture is topped with zesty enchilada sauce and melted cheese, then baked to perfection. Garnished with fresh cilantro, avocado slices, and lime wedges, it offers a colorful and satisfying vegetarian main that combines warmth and bright flavors. Ideal for a nutritious meal with gluten-free ingredients and customizable toppings.

The first time I made these enchilada boats, my roommate walked in and immediately asked what smelled like a Mexican restaurant had taken over our kitchen. That roasted squash scent filling the whole apartment was something else entirely.

I served these at a dinner party where two guests were convinced they hated zucchini, and they went back for seconds. Sometimes the best way to win people over is hiding vegetables under a blanket of melted cheese.

Ingredients

  • 4 large zucchini: Look for straight, evenly sized ones so they sit flat in the pan and cook evenly
  • 2 cups butternut squash, peeled and diced: Cutting into small half inch cubes helps it roast at the same rate as the tender zucchini
  • 1 small red onion, finely diced: Red onion brings a sweetness that balances the earthy beans
  • 2 cloves garlic, minced: Fresh garlic makes all the difference, do not use jarred stuff here
  • 1 (15 oz) can black beans, drained and rinsed: Rinse them really well to remove any metallic canned taste
  • 1 ½ cups enchilada sauce: Red sauce brings classic flavor but green creates this bright tangy situation thats pretty special too
  • 1 cup shredded Monterey Jack or cheddar cheese: Jack melts like a dream but cheddar brings more sharp flavor
  • ¼ cup crumbled queso fresco: That salty crumble on top is optional but adds such a nice restaurant finish
  • 1 tsp chili powder: This builds the base flavor layer without too much heat
  • ½ tsp ground cumin: Cumin is what makes it taste distinctly like enchiladas instead of just stuffed vegetables
  • ½ tsp smoked paprika: The smoked variety adds this subtle campfire quality
  • Salt and pepper, to taste: Taste your filling before stuffing, beans need a good amount of salt
  • 2 tbsp olive oil: One tablespoon for the boats, one for the filling
  • ¼ cup chopped fresh cilantro: The fresh herb cut against all that rich cheese is pretty essential
  • 1 avocado, sliced: Creamy avocado cools down any spice heat beautifully
  • Lime wedges: That acid hit at the end makes everything pop

Instructions

Get your oven ready:
Preheat to 400°F and grab a large baking sheet, you want everything hot and ready to go
Prep the zucchini boats:
Halve the zucchini lengthwise and scoop out the flesh with a spoon, leaving about a quarter inch shell, then chop half a cup of that scooped flesh really fine
Start the roasting:
Brush the boats with one tablespoon olive oil, season with salt and pepper, and arrange them cut side up on the baking sheet for 15 minutes
Build the filling base:
Heat the remaining oil in a large skillet over medium heat, cook the onion for 2 minutes, then add garlic, the reserved zucchini flesh, and squash cubes
Add the beans and spices:
Stir in black beans, chili powder, cumin, smoked paprika, and three quarters cup of enchilada sauce, cook for 2 to 3 minutes
Stuff the boats:
Pull those partially roasted zucchini from the oven and divide the filling evenly among all eight boats
Sauce and cheese:
Drizzle the remaining enchilada sauce over each stuffed boat, then sprinkle the shredded cheese all over the top
Final bake:
Return to the oven for 15 to 20 minutes until the cheese is bubbling and starting to brown in spots
Garnish and serve:
Top with crumbled queso fresco, fresh cilantro, avocado slices, and serve with lime wedges on the side
A serving of Black Bean and Butternut Squash Enchilada Boats garnished with avocado slices and lime wedges on a white plate. Pin it
A serving of Black Bean and Butternut Squash Enchilada Boats garnished with avocado slices and lime wedges on a white plate. | cookedandcozy.com

My sister called me the next day demanding the recipe because her husband kept talking about them. These boats have a way of lingering in peoples minds long after the plates are empty.

Making It Your Own

Sweet potatoes work beautifully instead of butternut squash and add even more natural sweetness. A pinch of cayenne pepper in the spice mix wakes everything up without overwhelming the palate.

Meal Prep Magic

The filling can be made up to three days ahead and stored in the refrigerator. When you are ready to eat, just stuff the boats and bake, turning weekday dinner into something that feels special.

Perfect Pairings

These boats are substantial enough to stand alone but a crisp green salad with lime vinaigrette cuts through the richness beautifully. Mexican rice or warm corn tortillas round out the meal.

  • Keep extra enchilada sauce warm on the table for drizzling
  • A cold beer or crisp white wine complements the spices perfectly
  • Leftovers reheat surprisingly well for lunch the next day
Freshly baked Black Bean and Butternut Squash Enchilada Boats inside zucchini boats with red enchilada sauce and queso fresco. Pin it
Freshly baked Black Bean and Butternut Squash Enchilada Boats inside zucchini boats with red enchilada sauce and queso fresco. | cookedandcozy.com

There is something deeply satisfying about turning vegetables into something this comforting and complete. Hope these boats find their way to your table soon.

Recipe FAQs

Yes, sweet potato is a great alternative that maintains sweetness and texture, roasting well alongside the other ingredients.

Replace the cheese with plant-based alternatives or omit it completely to keep it dairy-free without sacrificing flavor.

Halve the zucchini lengthwise and carefully scoop out the flesh to create uniform shells about ¼-inch thick for even roasting and stuffing.

Bake them for 15-20 minutes until the cheese is melted and bubbly and the zucchini is fork-tender.

Absolutely, a pinch of cayenne pepper can be added to the filling to introduce a spicy kick that complements the smoky spices.

Black Bean Butternut Squash

Roasted butternut squash and black beans fill tender zucchini boats with zesty sauce and melted cheese.

Prep 25m
Cook 35m
Total 60m
Servings 4
Difficulty Medium

Ingredients

Vegetables

  • 4 large zucchini
  • 2 cups butternut squash, peeled and diced (about ½-inch cubes)
  • 1 small red onion, finely diced
  • 2 cloves garlic, minced

Beans

  • 1 (15 oz) can black beans, drained and rinsed

Sauces & Dairy

  • 1 ½ cups enchilada sauce (red or green, as preferred)
  • 1 cup shredded Monterey Jack or cheddar cheese
  • ¼ cup crumbled queso fresco (optional)

Spices & Seasonings

  • 1 teaspoon chili powder
  • ½ teaspoon ground cumin
  • ½ teaspoon smoked paprika
  • Salt and pepper, to taste
  • 2 tablespoons olive oil

Toppings

  • ¼ cup chopped fresh cilantro
  • 1 avocado, sliced
  • Lime wedges

Instructions

1
Preheat the Oven: Preheat oven to 400°F (200°C).
2
Prepare the Zucchini Boats: Halve zucchini lengthwise and use a spoon to scoop out the flesh, leaving a ¼-inch shell. Reserve ½ cup of the scooped flesh and chop finely.
3
Season and Roast Zucchini: Place zucchini boats cut side up on a baking sheet. Lightly brush with 1 tablespoon olive oil and season with salt and pepper. Roast for 15 minutes.
4
Sauté Aromatics and Vegetables: Heat remaining olive oil in a large skillet over medium heat. Add onion and sauté for 2 minutes. Add garlic, chopped zucchini flesh, and butternut squash; cook 8-10 minutes until squash is just tender.
5
Add Beans and Spices: Stir in black beans, chili powder, cumin, smoked paprika, and half of the enchilada sauce (¾ cup). Cook for 2-3 minutes, then remove from heat.
6
Stuff the Zucchini Boats: Remove zucchini boats from oven. Spoon the black bean and squash mixture evenly into each boat.
7
Add Sauce and Cheese: Drizzle remaining enchilada sauce over stuffed boats and sprinkle with shredded cheese.
8
Bake Until Bubbly: Return to oven and bake 15-20 minutes, until cheese is melted and bubbly and zucchini is fork-tender.
9
Garnish and Serve: Garnish with queso fresco, cilantro, avocado slices, and lime wedges as desired. Serve hot.
Additional Information

Equipment Needed

  • Cutting board
  • Sharp knife
  • Spoon (for scooping)
  • Baking sheet
  • Large skillet
  • Measuring cups and spoons

Nutrition (Per Serving)

Calories 340
Protein 13g
Carbs 44g
Fat 13g

Allergy Information

  • Contains dairy (cheese). For dairy-free, use vegan cheese or omit cheese.
  • Naturally gluten-free, but double-check enchilada sauce for hidden gluten.
Lauren McCall

Home cook sharing easy, family-friendly recipes and practical kitchen tips.